PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G057100.1
Common NameB456_004G057100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 139aa    MW: 16112.7 Da    PI: 10.7324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G057100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-154594355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr ++ +g++ A Ird + ng   r++lg+f+++e Aa a+++ + + +g
  Gorai.004G057100.1 45 YRGVRKRP-WGKYSAGIRDSTRNG--VRVWLGTFDSPEAAALAYDQEAFSTRG 94
                        9*******.**********44465..********************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-2744103IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2144104IPR016177DNA-binding domain
PROSITE profilePS5103220.92944102IPR001471AP2/ERF domain
SMARTSM003801.8E-3144108IPR001471AP2/ERF domain
CDDcd000181.68E-2245102No hitNo description
PfamPF008471.7E-94591IPR001471AP2/ERF domain
PRINTSPR003674.2E-104556IPR001471AP2/ERF domain
PRINTSPR003674.2E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSFFLTSMTW KKWFGWIWWR RPWICPTTPL DIPKLKELPK EEKAYRGVRK RPWGKYSAGI  60
RDSTRNGVRV WLGTFDSPEA AALAYDQEAF STRGSSATLN FPLEVVRESL PSIKYRCDEG  120
CSPALALKRR HCLRKRSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2543105163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477474.11e-58PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-45ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2QSG85e-98A0A0D2QSG8_G
STRINGSolyc09g089930.1.18e-46(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-45ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]